Table 2 Used datasets
From: ReSeq simulates realistic Illumina high-throughput sequencing data
Identifier | Sequencer | Adapter | Species | Reference | Accession ID |
|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | Sample ID |
Ec-Hi2000-TruSeq | HiSeq 2000 | TruSeq | Escherichia coli | ASM584v2 | SRR490124 |
Ec-Hi2500-TruSeq | HiSeq 2500 | TruSeq | Escherichia coli | ASM584v2 | SRR3191692 |
Ec-Hi4000-Nextera | HiSeq 4000 | Nextera | Escherichia coli | ASM584v2 | Ecoli1_L001 |
Bc-Hi4000-Nextera | HiSeq 4000 | Nextera | Bacillus cereus | ASM782v1 | Bcereus1_L001 |
Rs-Hi4000-Nextera | HiSeq 4000 | Nextera | Rhodobacter sphaeroides | ASM1290v2 | Rsphaeroides1_L001 |
At-HiX-TruSeq | HiSeq X Ten | TruSeq (unknown barcode) | Arabidopsis thaliana | TAIR9.171 | ERR2017816 |
Mm-HiX-Unknown | HiSeq X Ten | Unknown | Mus musculus | GRCm38.p6 | ERR3085830 |
Hs-HiX-TruSeq | HiSeq X Ten | TruSeq | Homo sapiens | GRCh38.p13 | ERR1955542 |
Hs-Nova-TruSeq | NovaSeq 6000 | TruSeq | Homo sapiens | GRCh38.p13 | PRJEB33197 |
Ec-Mi-TruSeq | MiSeq | TruSeq | Escherichia coli | ASM584v2 | DRR058060 |
At-BGI | BGISEQ-500 | BGISEQ | Arabidopsis thaliana | TAIR9.171 | PRJNA562949 |