Table 3 Genes present in palindromes 1 and 2
From: A willow sex chromosome reveals convergent evolution of complex palindromic repeats
| Â | Gene symbol | Number of copies | GeneID | Chromosome of the non-W best hit | Best hit in A. thaliana | Arabidopsis name or description (function) | Best hit in P. trichocarpa v3 | Identity of P. trichocarpa best hit |
|---|---|---|---|---|---|---|---|---|
Palindromes W.P1 and W.P2 | SMR | 4[a] | Manually annotated | Chr19 | AT5G23520 | SMR (Small MutS Related) domain-containing protein) | Potri.T013000 | 90.70 |
RR | 4 | Sapur.15WG073500 | Chr19 | AT3G56380 | ARR17 (type A cytokinin response regulator) | Potri.019G133600 | 92.81 | |
Sapur.15WG073900 | ||||||||
Sapur.15WG074000 | ||||||||
Sapur.15WG075200 | ||||||||
R1 | 4[a] | Sapur.15WG073800 | Chr15Z | AT4G27220 | NB-ARC domain-containing disease resistance protein | Potri.T012900 | 81.00 | |
Sapur.15WG074100 | ||||||||
R2 | 3(1)[a] | Manually annotated | Chr17 | AT4G27220 | NB-ARC domain-containing disease resistance protein | Potri.T013300 | 61.23 | |
HCT | 4(1) | Sapur.15WG073400 | Chr19[b] | AT5G48930 | HCT (hydroxycinnamoyl-coa shikimate/quinate hydroxycinnamoyl transferase) | Potri.018G104700 | 58.02 | |
Sapur.15WG073600 | ||||||||
Sapur.15WG073700 | ||||||||
Sapur.15WG074200 | ||||||||
Sapur.15WG075100 | ||||||||
Palindrome W.P2 only | DRBM | 2 | Sapur.15WG074300 | Chr17 | AT1G09700 | ATDRB1 (dsRNA binding protein) | Potri.017G126700 | 61.95 |
Sapur.15WG075000 | ||||||||
TF2C | 1 | Sapur.15WG074400 | Chr08[c] | AT2G27040 | AGO4 (ARGONAUTE 4, siRNA mediated gene silencing) | NA | NA | |
ACDP | 1 | Sapur.15WG074900 | Chr17 | AT5G52790[d] | CBS domain protein with DUF21 (transmembrane transporter) | Potri.017G147900 | 83.33 | |
DPRIM | 2 | Sapur.15WG074500 | Chr17 | AT5G52800 | DNA primase | Potri.017G148000 | 92.52 | |
Sapur.15WG074800 | ||||||||
DUF789 | 2 | Sapur.15WG074600 | Chr17 | AT1G03610 | DUF789 (protein of unknown function) | Potri.017G152600 | 86.03 | |
Sapur.15WG074700 |