Fig. 4
From: Decontamination of ambient RNA in single-cell RNA-seq with DecontX
Expression of cell type-specific marker genes before and after decontamination in PBMCs. a For each gene, the average expression in the B cell clusters is plotted against the average expression in T cell clusters for three different datasets: data from sorted PMBCs profiled in different channels (left), data from the PBMC 4K before decontamination (middle), and the PBMC 4K data after decontamination with DecontX (right). b Percentage of cells expressing specific marker genes for different cell types for three different datasets. Markers included CD79A, CD79B, and MS4A1 for B cells; CD3E and CD3D for T cells; GNLY for NK cells; and LYZ, S100A8, and S100A9 for monocytes