Fig. 3
From: Decontamination of ambient RNA in single-cell RNA-seq with DecontX
Decontamination of the human-mouse cell mixture dataset. a The number of human UMIs is again plotted against the number of mouse UMIs for each droplet before and after decontamination with DecontX. After DecontX, the median percentage of contaminating counts for each droplet is 0.25% (0.12–0.75%). b, c DecontX-estimated contamination proportion is highly correlated to the known proportion of exogenous transcripts for each droplet predicted to have a human or mouse cell