Skip to main content

Table 1 12 yeast strains from two related clades were used in our analysis. Five strains were selected to be included in the five strains set and all strains were included in the all strains set. Graphs were constructed from strains in the respective strain set while all 11 non-reference strains were used for genotyping

From: Genotyping structural variants in pangenome graphs using the vg toolkit

Strain

Clade

Included in five strains set

Included in all strains set

S288C

S. cerevisiae

✓

✓

SK1

S. cerevisiae

✓

✓

YPS128

S. cerevisiae

✓

✓

UWOPS034614

S. cerevisiae

 

✓

Y12

S. cerevisiae

 

✓

DBVPG6765

S. cerevisiae

 

✓

DBVPG6044

S. cerevisiae

 

✓

CBS432

S. paradoxus

✓

✓

UFRJ50816

S. paradoxus

✓

✓

N44

S. paradoxus

 

✓

UWOPS919171

S. paradoxus

 

✓

YPS138

S. paradoxus

 

✓