Table 4 Comparison of presence/absence variation called by two different computational packages
From: Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice
| Sniffles | Assemblytics | Overlap | |
|---|---|---|---|
| Basmati 334 | |||
| Deletion counts | 11,989 | 11,247 | 4051 |
| Deleted base-pairs | 43,768,763 | 29,048,238 | 19,328,854 |
| Insertion counts | 11,447 | 12,161 | 3734 |
| Inserted base-pairs | 19,650,518 | 14,498,550 | 5,783,551 |
| Dom Sufid | |||
| Deletion counts | 9901 | 10,115 | 3649 |
| Deleted base-pairs | 36,600,114 | 26,128,143 | 17,274,967 |
| Insertion counts | 9834 | 11,134 | 3340 |
| Inserted base-pairs | 16,527,995 | 12,902,410 | 5,160,503 |
