From: Ratatosk: hybrid error correction of long reads enables accurate variant calling and assembly
ONT Flye | ONT+Ratatosk Flye | PacBio HiFi HiCanu | Ash1 | |
---|---|---|---|---|
Reference coverage (%) | 94.90 | 95.85 | 96.71 | 98.50 |
k-mer completeness (%) | 95.79 | 97.27 | 97.45 | 97.67 |
Quality value | 33.97 | 47.90 | 55.17 | 41.341 |
N50 (Mbp) | 37.98 | 45.05 | 44.67 | 34.30 |
NA50 (Mbp) | 20.83 | 25.46 | 19.78 | 16.48 |
# contigs | 972 | 430 | 422 | 2,412 |
# misassemblies | 68 | 75 | 84 | 188 |
# mismatches / 100 kbp | 121.71 | 112.66 | 178.36 | 161.09 |
# indels / 100 kbp | 109.67 | 26.66 | 26.84 | 27.00 |