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Fig. 3 | Genome Biology

Fig. 3

From: Quantitative profiling of N6-methyladenosine at single-base resolution in stem-differentiating xylem of Populus trichocarpa using Nanopore direct RNA sequencing

Fig. 3

Validation of Nanom6A using known m6A sites in plant. a Comparison of all m6A sites among Nanom6A, miCLIP, and EpiNano. b Comparison of four motifs (AGACT, GGACA, GGACC, and GGACT sites) among Nanom6A, MINES, and EpiNano. c Comparison of m6A sites between reported differential error sites (DES) from a previous study and identified m6A based on Nanom6A from the vir-1 mutant and VIR-complemented line, respectively. d The distribution of m6A sites from vir-1, VIRc, and Col-0, respectively. e Scatter plot showing the m6A ratio between vir-1 and VIRc. f Box plot shows the m6A ratio in vir-1, VIRc, and Col-0. g Bar plot of CCA1 shows m6A modification ratio from vir-1, VIRc, and Col-0, respectively

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