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Table 1 Peptide sequences derived from isoforms detected by proteome analysis

From: Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer

Detected peptide Peptide-detected cell lines (proteome analysis) Isoform-detected cell lines (MinION) Gene symbol Type GENCODE
NLPSNPLEFNPDVLK H1650, II-18, RERF-LC-KJ A427, ABC-1, H1437, H1648, H1650, H1819, H2126, H2228, H2347, II-18, PC-9, RERF-LC-KJ, VMRC-LCD ESYT2 Unannotated exon ENST00000275418
NLPSNPLEFNPDVLKK H1650, II-18, PC-9 A427, ABC-1, H1437, H1648, H1650, H1819, H2126, H2228, H2347, II-18, PC-9, RERF-LC-KJ, VMRC-LCD ESYT2 Unannotated exon ENST00000275418
TLGEIDAQHIQGVQETATDPR H1650 H1650, H2228, H2347, II-18, RERF-LC-OK FAM126A Unannotated exon ENST00000409923
DRLEEGCLK RERF-LC-Ad1 H1437, H2126, II-18, RERF-LC-Ad1 KRT7 Alternative 5′ splice site novel
EVPMVVVPPVGAK A549, H2228 A549, H1437, H1819, H2228, H322 RRBP1 Alternative last exon ENST00000398782
HLDAHTAAHSQSPR RERF-LC-Ad2 H322, RERF-LC-Ad2 SUN1 Combination (shuffling, unannotated exon) Novel
RHLDAHTAAHSQSPR RERF-LC-Ad2 H322, RERF-LC-Ad2 SUN1 Combination (shuffling, unannotated exon) Novel