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Table 2 Summary and annotation statistics for different types of SVs in peach

From: Genome structure variation analyses of peach reveal population dynamics and a 1.67 Mb causal inversion for fruit shape

Category Deletions Insertions Duplications Inversions Total
Number 15,138 10,882 1558 156 27,734
Size (bp) 25,889,284 6,484,273 3,896,898 2,222,324 38,492,779
CDS 2539 (2820) 474 (434) 409 (628) 63 (417) 3485 (4299)
 Full CDS 1233 (1562) 0 (0) 173 (322) 30 (378) 1436 (2262)
 Partial CDS 1306 (1258) 474 (434) 236 (306) 33 (39) 2049 (2037)
Intron 1081 (933) 1156 (989) 123 (123) 9 (8) 2369 (2053)
Upstream (< 1 kb) 2209 (2177) 2030 (1955) 180 (186) 16 (16) 4435 (4334)
Downstream (< 1 kb) 1532 (1865) 1457 (1717) 147 (194) 8 (14) 3144 (3790)
Intergenic 7767 5754 697 60 14,218
  1. Values inside parentheses indicate the number of genes overlapping with the number of SVs