Table 2 Summary and annotation statistics for different types of SVs in peach
Category | Deletions | Insertions | Duplications | Inversions | Total |
|---|---|---|---|---|---|
Number | 15,138 | 10,882 | 1558 | 156 | 27,734 |
Size (bp) | 25,889,284 | 6,484,273 | 3,896,898 | 2,222,324 | 38,492,779 |
CDS | 2539 (2820) | 474 (434) | 409 (628) | 63 (417) | 3485 (4299) |
Full CDS | 1233 (1562) | 0 (0) | 173 (322) | 30 (378) | 1436 (2262) |
Partial CDS | 1306 (1258) | 474 (434) | 236 (306) | 33 (39) | 2049 (2037) |
Intron | 1081 (933) | 1156 (989) | 123 (123) | 9 (8) | 2369 (2053) |
Upstream (< 1 kb) | 2209 (2177) | 2030 (1955) | 180 (186) | 16 (16) | 4435 (4334) |
Downstream (< 1 kb) | 1532 (1865) | 1457 (1717) | 147 (194) | 8 (14) | 3144 (3790) |
Intergenic | 7767 | 5754 | 697 | 60 | 14,218 |