Table 1 Summary of statistics for the RYP1 genome assembly compared with the published Lovell v2.0 reference genome

Total assembly size (Mb)

239.1

227.4^b

Number of contigs

87

2525^b

Largest contigs (Mb)

25.9

1.5^b

Contig N50

11.5 Mb

255.4 kb^b

Sequences anchored to chromosomes (Mb)

235.0

225.7^b

Genomic GC content (%)

37.6

37.0

Number of gaps

54

1828

Complete BUSCOs (%)^a

97.4

97.6

LTR assembly index, LAI

22.33

21.29

Intact LTR length (Mb)/number

10.50/1656

8.84/1416

Repetitive sequences (Mb)/(%)

115.01/48.11

101.99/44.85

Protein-coding genes

32,604

31,972^b

Transcripts

37,827

47,089

Average gene length (bp)

2223

2215