Fig. 1

Heterozygous genomic variants and other features across the RYP1 genome. Tracks (outer to inner circles) indicate the following: a, b Transposable-element (TE) (a) and gene (b) density (window size of 100 kb). c Gene expression level (FPKM; the highest expression of different sequenced tissues - see Table S4 for details). d–h Heterozygous deletions (d), insertions (e), duplications (f), and inversions (g) identified by high-depth (589.74×) PacBio long-read data, and SNPs/InDels (h) identified by 147.97× coverage Illumina short-read data (the outer and inner layers respectively indicate SNPs and InDels density in a 100 kb window size). i GC content (window size of 100 kb). The outer orange circle represents the chromosome length (Mb) for the RYP1 genome assembly