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Table 1 Assembly and validation statistics of two haplotype-resolved genome assemblies

From: Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes

Haploid assemblies of “Rojo Pasión”

Genome-specific k-mers common with parental WGS

Precision in haplotyping

Size [Mb]

Chromosome scaffolds

Contig N50 [Mb]

N50 [Mb]

Protein-coding genes (total genes)

“Currot”

“Orange Red”

“Currot” haplotype

12,983,934

129,874

99.1%

216.0

8

0.662

25.8

30,661 (52,472)

“Orange Red” haplotype

81,422

16,807,958

99.5%

215.2

8

0.664

25.5

30,378 (51,701)

  1. The eight main chromosome-level scaffolds of each haplotype made up ~ 99% of the respective assembly