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Table 3 Assessment of similarity criteria between results of 25-kb vs. 50-kb and 50-kb vs. 100-kb resolutions for all methods

From: SuperTAD: robust detection of hierarchical topologically associated domains with optimized structural information

   

SuperTAD

SuperTAD(F)

OnTAD

deDoc

3DNetMod

GMAP

IC-Finder

TADtree

Arrowhead

GM12878

25/501

OR

red0.96

red0.93

0.91

0.88

N/A2

0.68

0.92

0.64

0.64

  

WS

red0.97

red0.96

0.94

0.90

N/A

0.78

0.94

0.75

0.78

  

MoC

red0.88

red0.84

0.78

0.74

N/A

0.69

0.76

0.55

0.44

 

50/100

OR

red0.93

red0.89

0.74

0.82

N/A

N/A

0.77

0.56

0.67

  

WS

red0.95

red0.95

0.86

0.85

N/A

N/A

0.84

0.79

0.65

  

MoC

red0.80

red0.79

0.60

0.70

N/A

N/A

0.63

0.59

0.17

IMR90

25/50

OR

red0.97

red0.93

0.80

0.85

N/A

0.57

0.76

0.60

0.4

  

WS

red0.98

red0.99

0.93

0.88

N/A

0.75

0.86

0.75

0.47

  

MoC

red0.91

red0.95

0.75

0.70

N/A

0.66

0.66

0.53

0.34

 

50/100

OR

red0.93

0.89

0.62

0.81

N/A

N/A

0.91

0.56

red0.92

  

WS

red0.95

0.94

0.81

0.84

N/A

N/A

red0.95

0.73

0.87

  

MoC

red0.81

0.79

0.59

0.69

N/A

N/A

red0.80

0.61

0.54

  1. The top 2 largest values are labeled in red for each line
  2. OR overlapping ratio, WS weighted similarity, MoC measure of concordance
  3. 125/50: agreement of 25 kb vs. 50 kb; 50/100: agreement of 50 kb vs. 100 kb
  4. 2N/A: lack of as least one result