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Fig. 3 | Genome Biology

Fig. 3

From: An integrated peach genome structural variation map uncovers genes associated with fruit traits

Fig. 3

Identification of the gene underlying the fruit mature date (MD) trait. a Manhattan plot of MD using GWAS with SVs (top) and LD plot of the 200-kb region surrounding the most significant signal (bottom). Color for each box in LD plot represents LD relationship, showing increasing LD from white to red color. The number in each box represents the LD value multiplied by 100. b Allelotypes of the 9-bp insertion in Prupe.4G186800 identified in 136 peach accessions and their relationship with MD. In each bar plot, the black line in the box indicates the mean value, and the lower and upper bounds of the box indicate the first and third quartiles, respectively. Groups labeled with different letters indicate significant difference at P < 0.01. c, d Expression patterns during fruit development of differentially expressed genes (DEGs) in the 200-kb region surrounding the most significant signal. The “JL” cultivar is a bud mutation of cultivar “SS” and its fruit matures 15 days earlier than “SS”. The “HH” cultivar is a bud mutation of cultivar “NJC83” and its fruit matures 10 days earlier than “NJC83.” The candidate gene, Prupe.4G186800, is highlighted in pink

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