Table 3 Assemblies used for graph construction
From: The design and construction of reference pangenome graphs with minigraph
Name | Species | Population | Accession/source |
|---|---|---|---|
CHM1 | Human | N/A | GCA_001297185.1 |
CHM13 | Human | N/A | GCA_000983455.1 |
NA12878 | Human | European | [44], phased |
NA24385 | Human | Jewish | [44], phased |
PGP1 | Human | N/A | [44], phased |
NA19240 | Human | African | GCA_001524155.4 |
HG00514 | Human | East Asian | GCA_002180035.3 |
HG01352 | Human | American | GCA_002209525.2 |
NA19434 | Human | African | GCA_002872155.1 |
HG02818 | Human | African | GCA_003574075.1 |
HG03486 | Human | African | GCA_003086635.1 |
HG03807 | Human | South Asian | GCA_003601015.1 |
HG00733 | Human | American | GCA_002208065.1 |
HG02059 | Human | East Asian | GCA_003070785.1 |
HG00268 | Human | European | GCA_008065235.1 |
HG04217 | Human | South Asian | GCA_007821485.1 |
AK1 | Human | East Asian | GCA_001750385.1 |
Clint | Chimpanzee | Â | GCA_002880755.3 |
Susie | Gorilla | Â | GCA_900006655.3 |
Kamilah | Gorilla | Â | GCA_008122165.1 |
Susie | Orangutan | Â | GCA_002880775.3 |