From: The design and construction of reference pangenome graphs with minigraph
Col | Type | Description |
---|---|---|
1 | string | Query sequence name |
2 | int | Query sequence length |
3 | int | Query start coordinate (0-based; closed) |
4 | int | Query end coordinate (0-based; open) |
5 | char | Strand relative to col. 6 |
6 | string | Graph path matching regular expression |
 |  | /([><][^\s><]+(:\d+-\d+)?)+|([^\s><]+)/ |
7 | int | Path sequence length |
8 | int | Path start coordinate |
9 | int | Path end coordinate |
10 | int | Number of matching bases in the mapping |
11 | int | Number of bases, including gaps, in the mapping |
12 | int | Mapping quality (0–255 with 255 for missing) |