Fig. 1
From: The design and construction of reference pangenome graphs with minigraph
Example rGFA and GAF formats. a Example rGFA format. rGFA-specific tags include SN, name of the stable sequence from which the vertex is derived; SO, offset on the stable sequence; SR, rank: 0 if the vertex or edge is on the linear reference; >0 for non-reference. b Corresponding sequence graph. Each thick arrow represents an oriented DNA sequence. c Example GAF format, using the segment coordinate, for reads “ GTGGCT” and “ CGTTTCC” mapped to the graph. d Equivalent GAF format using the stable coordinate