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Fig. 3 | Genome Biology

Fig. 3

From: A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

Fig. 3

Somatic epimutation rates for single sites, regions, and by genomic feature. mCG (a) and mCHG (b) divergence by branch time divergence for single sites and regions; mCG (c) and mCHG (d) divergence by branch time divergence for genomic features Pro (promoter; 2 kb upstream of TSS), mRNA, TE (transposable elements), and IGR (intergenic regions). The dots show the individual observed divergences, whereas the line represents the fit of the data to the model. Estimated mCG (e) and mCHG (f) gain rates by feature. Estimated mCG (g) and mCHG (h) loss rates by feature. Ratio of mCG (i) and mCHG (j) loss to gain by feature. An F-test was used comparing the neutral model vs null model (Supplementary Text). See Additional file 2: Table S9 for P values. Error bars represent bootstrapped 95% confidence intervals of the estimates. Abbreviations: Pro, promoter; TE, transposable elements and repeats; and IGR, intergenic regions

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Genome Biology

ISSN: 1474-760X

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