From: Haplotype threading: accurate polyploid phasing from long reads
Coverage | Method | Collapsing regions | Non-collapsing regions | Total |
---|---|---|---|---|
(a) Real read data (tetraploid) | ||||
40 × | WH-PP | 0.29 | 0.69 | 0.60 |
H-PoPG | 2.02 | 2.16 | 2.02 | |
\(\text {SER}(\frac {\textsc {H-PoPG}}{\textsc {WH-PP}})\) | 6.97 | 3.13 | 3.37 | |
80 × | WH-PP | 0.14 | 0.46 | 0.35 |
H-PoPG | 1.05 | 1.30 | 1.24 | |
\(\text {SER}(\frac {\textsc {H-PoPG}}{\textsc {WH-PP}})\) | 7.50 | 2.83 | 3.54 | |
(b) Simulated read data (tetraploid) | ||||
40 × | WH-PP | 0.18 | 0.45 | 0.43 |
H-PoPG | 2.01 | 1.63 | 1.68 | |
\(\text {SER}(\frac {\textsc {H-PoPG}}{\textsc {WH-PP}})\) | 11.17 | 3.62 | 3.91 | |
80 × | WH-PP | 0.08 | 0.37 | 0.32 |
H-PoPG | 0.94 | 0.98 | 0.99 | |
\(\text {SER}(\frac {\textsc {H-PoPG}}{\textsc {WH-PP}})\) | 11.75 | 2.65 | 3.09 |