Table 3 Results of the variant genotyping experiment
From: GraphAligner: rapid and versatile sequence-to-graph alignment
Scenario | Variants | Precision | Recall | F-measure |
|---|---|---|---|---|
GIAB | All | 0.9929 | 0.9774 | 0.9851 |
| Â | SNP | 0.9994 | 0.9840 | 0.9916 |
| Â | Non-SNP | 0.9518 | 0.9353 | 0.9435 |
1000G | All | 0.9694 | 0.8806 | 0.9229 |
| Â | SNP | 0.9806 | 0.9352 | 0.9574 |
| Â | Non-SNP | 0.8462 | 0.5417 | 0.6606 |
1000G+GIAB | All | 0.9685 | 0.9712 | 0.9699 |
| Â | SNP | 0.9801 | 0.9797 | 0.9799 |
| Â | Non-SNP | 0.8556 | 0.8893 | 0.8721 |