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Table 2 Results of the comparison to vg

From: GraphAligner: rapid and versatile sequence-to-graph alignment

Aligner

Reads correctly aligned

CPU-time (HH:mm:ss)

Peak memory (Gb)

vg index

–

1:07:44

12.1

vg map

93.8%

3:13:15

4.1

GraphAligner

96.6%

0:19:30

3.6

  1. Simulated reads were aligned to a chromosome 22 variation graph using both GraphAligner and vg