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Table 1 Spearman correlation against ground truth for data simulated using Polyester

From: Alignment and mapping methodology influence transcript abundance estimation

Method

Spearman correlation with truth

Bowtie2

0.976 ± 0.001

Bowtie2Strict

0.976 ± 0.001

Bowtie2rsem

0.980 ± 0.000

SA

0.978 ± 0.000

SAF

0.977 ± 0.001

Quasi

0.976 ± 0.000

STAR

0.965 ± 0.001

STARStrict

0.963 ± 0.001

STARrsem

0.967 ± 0.001

  1. The counts were based on an experimental sample from human