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Table 1 Spearman correlation against ground truth for data simulated using Polyester

From: Alignment and mapping methodology influence transcript abundance estimation

Method Spearman correlation with truth
Bowtie2 0.976 ± 0.001
Bowtie2Strict 0.976 ± 0.001
Bowtie2rsem 0.980 ± 0.000
SA 0.978 ± 0.000
SAF 0.977 ± 0.001
Quasi 0.976 ± 0.000
STAR 0.965 ± 0.001
STARStrict 0.963 ± 0.001
STARrsem 0.967 ± 0.001
  1. The counts were based on an experimental sample from human