From: Alignment and mapping methodology influence transcript abundance estimation
Method | Spearman correlation with truth |
---|---|
Bowtie2 | 0.976 ± 0.001 |
Bowtie2Strict | 0.976 ± 0.001 |
Bowtie2rsem | 0.980 ± 0.000 |
SA | 0.978 ± 0.000 |
SAF | 0.977 ± 0.001 |
Quasi | 0.976 ± 0.000 |
STAR | 0.965 ± 0.001 |
STARStrict | 0.963 ± 0.001 |
STARrsem | 0.967 ± 0.001 |