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Table 6 Estimated relative abundance of MAGs classified at phylum level across diet treatments

From: 1200 high-quality metagenome-assembled genomes from the rumen of African cattle and their relevance in the context of sub-optimal feeding

Phylum

Average relative abundance (%)

40% MER

60% MER

80% MER

Bacteroidetes

53.15

57.80

55.31

Firmicutes

24.28

21.54

24.12

Proteobacteria

3.41

2.52

2.93

Fibrobacteres

0.08

0.24

0.10

Actinobacteria

0.02

0.01

0.01

Lentisphaerae

12.03

12.78

12.74

Spirochaetes

0.51

0.34

0.24

Tenericutes

1.02

0.57

1.41

Planctomycetes

1.33

0.47

0.28

Fusobacteria

0.43

0.07

0.33

Verrucomicrobia

0.003

0.010

0.043

Elusimicrobia

2.93

3.23

1.87

Synergistetes

0.0240

0.0016

0.0004

Ignavibacteriae

0.21

0.10

0.25

Euryarchaeota

0.12

0.08

0.10

Bacteria

0.46

0.23

0.26

  1. Estimated relative abundance of MAGs classified by MAGpy (DIAMOND) as members of rumen phyla. Values represent average abundance of each phylum associated with each diet treatment (40%, 60% and 80% MER)
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Genome Biology

ISSN: 1474-760X

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