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Fig. 5 | Genome Biology

Fig. 5

From: Improved reference genome of the arboviral vector Aedes albopictus

Fig. 5

Schematic of mosquito development and mapping statistics of sequenced transcripts to Ae. albopictus genome assemblies. a Developmental transcriptome of Ae. albopictus. Our developmental time course included 34 stages spanning the major developmental groups which are indicated by color bars and are organized as follows: M (blue, male testes, male carcass), Fc (pink, NBF carcass, and multiple time points PBM: 12 h, 24 h, 36 h, 48 h, 60 h, and 72 h), Ov (orange, NBF ovaries, and multiple ovarian timepoints PBM: 12 h, 24 h, 36 h, 48 h, 60 h, and 72 h), D (tan, diapause at multiple time points: 0–1 week, 1–2 weeks, 2–3 weeks, and 3–4 weeks), Emb (embryo at multiple time points: 0–1 h, 0–2 h, 2–4 h, 4–8 h, 8–12 h, 12–16 h, 16–20 h, 20 h–24 h, 24–28 h, 28–32 h, 32–36 h, 36–40 h, 40–44 h, 44–48 h, 48–52 h, 52–56 h, 56–60 h, 60–64 h, 64–68 h, and 68–72 h), L (gray, larvae 1st, 2nd, 3rd, and 4th instar larva stages), and P (yellow, pupae, early male and female, and late male and female pupa stages). b Read mapping analysis of Ae. albopictus developmental samples against the C6/36 cell line assembly (canu_80X_arrow2.2) and AalbF2 genome assemblies. The distribution reflects the percentage of fragments mapped to too many loci (maroon), fragments mapped to multiple loci (blue), and uniquely mapped fragments (dark blue). There is a significant reduction of duplication in AalbF2 genome assembly compared to the C6/36 cell line (Canu_80X_arrow2.2) genome. More transcripts fell under the uniquely mapped category in the AalbF2 genome

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