Fig. 4
From: Improved reference genome of the arboviral vector Aedes albopictus
Genome-wide polymorphism in Aedes albopictus. a Mean nucleotide diversity. b Global FST, the mean, and standard deviation were calculated from sliding windows analysis. c FST estimates between the two wild populations, Tapachula (green) and Tampon (Blue). FST estimates measured across the whole genome with sliding windows of 50 kb with 10-kb steps. Scaffolds that have been assigned to chromosomes 1, 2, and 3 are on the left side of the plot. The remaining unassigned scaffolds are shown on the right side. The unassigned scaffolds were placed in alphabetical order from left to right. d Overview of the pattern of nucleotide diversity across the genome. Nucleotide diversity was measured using 50-kb-long sliding windows and 10-kb steps. e Linkage disequilibrium (r2) for two wild populations and a laboratory strain. Red, green, and blue lines represent the fitting curve estimated with the ngsLD package, and shaded areas around the lines represent confidence intervals from 100 bootstraps