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Table 1 Features of COCOA and related methods

From: COCOA: coordinate covariation analysis of epigenetic heterogeneity

  1. *1BROCKMAN uses k-mer counts, but the regions containing each k-mer can be conceptualized as a region set. *2MOGSA and pathwayPCA can involve multiple “omics” data types, but including gene-centric data such as gene or protein expression is important for the methods. *3coMethDMR finds differentially methylated regions but often annotates them in reference to genes