Table 4 Runtime and memory comparison between Merqury and KAT comp
From: Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies
Assembly | Haploid (maternal) | Diploid (maternal, paternal, and combined) | ||||||
|---|---|---|---|---|---|---|---|---|
Compute | CPU (h) | Max mem (GB) | CPU (h) | Max mem (GB) | ||||
Function | Merqury | KAT | Merqury | KAT | Merqury | KAT | Merqury | KAT |
Count k-mers in reads | 13.8 | 22.4 | 21.2 | 44.1 | 13.8 | 63.0 | 21.2 | 44.1 |
Spectra-cn | 3.9 | 10.1 | 9.7 | 10.6 | ||||
Spectra-asm, QV, Completeness | – | – | – | – | ||||
Spectra-hap | 2.0 | – | 1.5 | – | 3.4 | – | 3.2 | – |
Blobs, phase block, switch error | 2.8 | – | 10.3 | – | 5.6 | – | 8.1 | – |
Total | 22.5 | 22.4 | 21.2 | 44.1 | 32.5 | 63.0 | 21.2 | 44.1 |