Fig. 6
From: Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies
Evaluating haplotype completeness for diploid assemblies using Merqury. Spectra-cn plots of the maternal and paternal assemblies of the TrioCanu NA12878 assembly are displayed as a confusion matrix. a Hap-mer spectra-cn plot of the maternal assembly. All maternal hap-mers are expected to be found in the maternal (top left), with no paternal hap-mers (top right). Any maternal hap-mers not found in this assembly are missing hap-mers (top left, black). Paternal hap-mers (top right, red) are false positive phasing errors. b Hap-mer spectra-cn plot of the paternal assembly. This time, no maternal hap-mers should be seen (bottom left), and only paternal markers are expected to be present (bottom right). TP, true positives; FN, false negatives; TN, true negatives; FP, false positives