From: CRISPR and transposon in vivo screens for cancer drivers and therapeutic targets
Feature | CRISPR | Transposon |
---|---|---|
Cancer model quality | Transplantation models: limited by lack of immune system. Autochthonous models: high quality. | High-quality given autochthonous nature. |
Tissue delivery of components | Can be technically challenging. Options include: - Transfection, with or without PB/SB: allows multiplexing; limited to certain organs. - Lentivirus or AAV: wide range of tissues are accessible; relatively limited cargo capacity. - Nanoparticles: high cargo capacity, low immunogenicity. | Constitutive and conditional transposase mouse knock-in alleles are available. No further delivery of exogenous components is required. |
Efficiency of mutations | High efficiency in vitro (for transplantation model). In vivo mutagenesis has typically lower efficiency than in vitro. | High efficiency of gene disruption in vivo; gene activation efficiency is variable. Therefore, TSGs are more identifiable than oncogenes1. |
Types of mutations | Disruptive (indels)/knockout. Transcriptional activation/repression. Translocations/deletions. Point mutations. | Disruption or activation of expression. Drop-out screens are not possible. |
Alleles targeted | Can induce mutations in both alleles of diploid cells | Usually only one allele is mutated in diploid cells. |
Unwanted genetic effects | Low off-target effects. On-target unintended effects may occur. | Local hopping Footprint mutations with SB. |
Genome coverage in screen | Focused or genome-wide libraries. High library coverage can be challenging to achieve in vivo. | Whole-genome including non-coding regions. PB favors open chromatin. SB and PB have differing integration preferences. |
Time to conduct screen | Relatively short: direct injection of CRISPR components into tissues is required. | Relatively long: compound mutant mice (typically three or four alleles) need generating. |
Costs of screen | Relatively low. | High costs due to long mouse breeding times. |