Fig. 5
From: ContamLD: estimation of ancient nuclear DNA contamination using breakdown of linkage disequilibrium
Contamination estimates from ContamLD, ANGSD, and ContamMix in 439 ancient individuals of variable ancestry. ANGSD estimates (method 1) are plotted on the x-axis, and on the y-axis are either a ContamMix or b ContamLD estimates. In red are samples that were flagged in ContamLD as “Very_High_Contamination” based on having uncorrected estimates over 15%. All ContamLD estimates below 0 were set to 0