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Fig. 2 | Genome Biology

Fig. 2

From: ContamLD: estimation of ancient nuclear DNA contamination using breakdown of linkage disequilibrium

Fig. 2

Genetic divergence between uncontaminated individual and contamination sources or haplotype panels impacts ContamLD estimates. a Ancient Iberian (I3756, 1.02× coverage) contaminated with CEU with haplotype panels generated from CEU, TSI, CHB, and YRI populations. b Contamination estimates from the same ancient Iberian contaminated with TSI, CHB, or YRI and analyzed with a CEU panel; from an ancient East Asian (DA362.SG, 1.10× coverage) contaminated with CEU and analyzed with a CHB panel; and from an ancient South African (I9028.SG, 1.21× coverage) contaminated with CEU and analyzed with a YRI panel. The black dotted line is y = x, corresponding to a perfect estimate of contamination. All estimates use the damage-restricted correction (option 1)

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