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Table 3 Summary of alternative splicing events

From: Polymorphic mobile element insertions contribute to gene expression and alternative splicing in human tissues

ASEs

Total events (genes)

Events in sQTL (genes)

ME causal (genes)

ME highest causal (genes)

A3

14,918 (7419)

537 (456)

165 (154)

50 (49)

A5

14,197 (7144)

576 (484)

185 (165)

55 (53)

AF

70,352 (9036)

3063 (1332)

994 (533)

253 (172)

AL

18,369 (5103)

887 (513)

314 (198)

103 (72)

MX

4803 (2681)

210 (179)

71 (61)

21 (18)

RI

5718 (3237)

219 (178)

78 (66)

25 (23)

SE

37,525 (12,232)

1692 (1267)

494 (418)

154 (135)

Total

165,882 (17,015)

7184 (2992)

2301 (1231)

661 (435)

  1. Events in sQTL—number of unique ASEs in the ME-only sQTL analysis with FDR < 10%
  2. ME causal and ME highest causal—number of unique ASEs with pMEIs predicted as a causal variant or a causal variant with the highest probability, respectively
  3. The numbers in the parentheses are the number of genes/gene clusters of the corresponding ASEs. Genes sharing the same exons were merged into gene clusters by SUPPA when calculating PSI scores. Because some genes have multiple ASEs, the overall gene count is not the sum of the gene count in different ASEs
  4. ASEs alternative splicing events, A3/A5 alternative 3′/5′ splice site, AF/AL alternative first/last exon, MX mutually exclusive exon, RI retained exon, SE skipping exon
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Genome Biology

ISSN: 1474-760X

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