Skip to main content

Table 2 List of data sets used in the main text and supplementary materials

From: Demystifying “drop-outs” in single-cell UMI data

ID Data set Species Protocol
10x 5KNeuron Mouse neuron 10x (v3.1) CR* 3.0.2
10x 10KHeart Mouse heart 10x (v3) CR 3.0.0
GSE111108 [37] Tian2018 Human cell lines 10x Chromium
GSE115189[17] Freytag2018 Human PBMC 10x (v2)
10x 1KNeuron Mouse neuron 10x (v2) CR 2.1.0
SRP073767[3] Zhengmix4eq Human PBMC 10x (v1) CR 1.1.0
SRP073767 Zhengmix4uneq Human PBMC 10x (v1) CR 1.1.0
SRP073767 Zhengmix8eq Human PBMC 10x (v1) CR 1.1.0
SRP073767 PBMC3k Human PBMC 10x (v1) GemCode
SRP073767 PBMC4k Human PBMC 10x (v1) Chromium
SRP073767 PBMC68k Human PBMC 10x (v1) CR 1.1.0
GSE84133[36] Baron2016 Human pancreas inDrop
GSE114724[27] AziziPatient09Rep1 Human breast tumor 10x CR 2.1.1
GSE114724 AziziPatient09Rep2 Human breast tumor 10x CR 2.1.1
GSE114724 AziziPatient10Rep1 Human breast tumor 10x CR 2.1.1
GSE114724 AziziPatient11Rep1 Human breast tumor 10x CR 2.1.1
GSE114724 AziziPatient11Rep2 Human breast tumor 10x CR 2.1.1
SDY998[39] Zhang2019 Human joint synovial CEL-seq2
GSE63473[2] Macosko2015 Mouse Drop-seq
GSE77288 [25] Tung2017 Human iPSC HiSeq 2500
Tabula Muris [38] Tabula Muris Mouse 10x (v2)
  1. CR cell ranger