DMS dataset | No. of replicates | Error model parameters (avg ± s.d. across replicates) | Estimated error magnitude relative to data‡ | ||||||
---|---|---|---|---|---|---|---|---|---|
minput | moutput | \( \sqrt{a} \)^ | Variance-based | Bayesian reg. of variance [51] | Count-based | Enrich2 [36] | DiMSum | ||
FOS-JUN [20] | 3 | 1.1 ± 0.0 | 1.6 ± 0.7 | 0.02 ± 0.01 | 0.02 | 0.65 | 0.88 | 0.98 | 1.04 |
FOS [20] | 3 | 6.3 ± 0.4 | 5.0 ± 0.3 | 0.02 ± 0.01 | 0.01 | 0.65 | 0.41 | 0.58 | 0.97 |
GB1 [5] | 3 | 1.1 ± 0.1 | 1 ± 0 | 0.04 ± 0.02 | 0.001 | 0.6 | 0.83 | 0.99 | 0.98 |
GRB2 unpublished dataset 1 | 3 | 6.2 ± 1.2 | 1.1 ± 0.1 | 0.05 ± 0.02 | 0.024 | 0.63 | 0.37 | 0.59 | 0.84 |
GRB2 unpublished dataset 2 | 3 | 1 ± 0 | 1 ± 0 | 0.03 ± 0.02 | 0.017 | 0.62 | 0.79 | 0.93 | 0.98 |
TDP-43 (290-331) [6] | 3 | 1.3 ± 0.4 | 1.5 ± 0.1 | 0.07 ± 0.05 | 0.003 | 0.64 | 0.76 | 0.91 | 0.98 |
TDP-43 (332-373) [6] | 4 | 1.5 ± 0.6 | 1.2 ± 0.4 | 0.1 ± 0.06 | 0.27 | 0.85 | 0.71 | 0.9 | 0.92 |
tRNA NaCl + 37C [7] | 6 | 1 ± 0 | 1.1 ± 0.1 | 0.03 ± 0.02 | 0.72 | 0.94 | 0.92 | 1.09 | 0.96 |
tRNA 23C [50] | 5 | 85 ± 55 | 96 ± 78 | 0.15 ± 0.04 | 0.54 | 0.87 | 0.064 | 0.57 | 0.81 |
tRNA 30C [50] | 5 | 201 ± 187 | 121 ± 99 | 0.14 ± 0.07 | 0.58 | 0.90 | 0.059 | 0.59 | 0.88 |
tRNA 37C [50] | 3 | 38 ± 19 | 39 ± 11 | 0.04 ± 0.01 | 0.01 | 0.63 | 0.15 | 0.32 | 0.96 |
tRNA DMSO [50] | 3 | 101 ± 48 | 192 ± 124 | 0.04 ± 0.01 | 0.066 | 0.63 | 0.08 | 0.24 | 0.97 |