Fig. 5
From: Single-cell ATAC-seq signal extraction and enhancement with SCATE
Comparison of different methods in an example genomic region. Each row is a method, each column corresponds to a different cell type or pooled cell number. All columns show the same genomic region. The blue boxes highlight two CREs. The left CRE occurs in both GM12878 and K562. It cannot be detected by Raw reads, Binary and SCRAT CRE cluster methods in a single cell, but can be detected by Average DNase-seq and SCATE. The right CRE is K562-specific. It cannot be detected by Average DNase-seq but can be detected by SCATE