An evolutionary driver of interspersed segmental duplications in primates

Table 4 Sequence composition of LCR16a sites of integration

Primate	Build	Breakpoint coordinate			Deletion at pre-integration site (kbp)	Repeats (%)	LTR (%)	LINE (%)	SINE (%)	Unique (%)	Duplication insertion (kbp)
Marmoset	hg38	chr4	160005326	160008761	3.4	99.6	.	81.3	17.6	0.03	21.6
Marmoset	hg38	chr20	20011993	20016575	4.6	66.8	4.9	19.3	37.5	33	25.7
Marmoset	hg38	chr11	134267373	134272307	4.9	48	10.3	5.8	26.6	52	243
Marmoset	hg38	chr11	93232994	93232995	0	.	.	.	.	.	148
Marmoset	hg38	chr16	11452411	11525004	72.6	57.6	3.66	14.7	29.3	42.3	21
Marmoset^{^}	hg38	chr17_chr13	83228403	19349530	.	.	.	.	.	.	358.5
Chimpanzee	rheMac8	chr20	15098676	15131780	32.5	65.8	10.4	3.41	50	0.5	69.8
Squirrel monkey	hg38	chr2	100587592	100601735	14.1	69.9	2.6	4.8	35.3	30.1	52.5
Chimpanzee*	hg38	chr17	44694772	44700734	5.9	92.7	0	8.3	70.6	7.3	80
Orangutan*	hg38	chr13	24407831	24480143	80.1	55.6	5	23.1	22	44.4	140
Orangutan*	hg38	chr13	25361286	25366987	5.7	74.1	2.2	55.5	15.2	25.9	90
Gorilla*	hg38	chr16	27185611	27191436	5.8	83.7	30	26.3	22.8	16.3	100
Gorilla*	hg38	chr16	23303992	23307429	3.4	91.2	0	23.6	71.3	4.2	50
Chimpanzee*	hg38	chr16	2782469	2798105	16.1	61.8	17.3	13.4	23.7	38.2	30

Sequence composition of pre-integration site based on analysis of the orthologous location in the human genome (GRCh38)
*Reported previously [14]
^{^}Cytogenetic rearrangement between chromosomes

ISSN: 1474-760X