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Table 4 Sequence composition of LCR16a sites of integration

From: An evolutionary driver of interspersed segmental duplications in primates

Primate Build Breakpoint coordinate    Deletion at pre-integration site (kbp) Repeats (%) LTR (%) LINE (%) SINE (%) Unique (%) Duplication insertion (kbp)
Marmoset hg38 chr4 160005326 160008761 3.4 99.6 . 81.3 17.6 0.03 21.6
Marmoset hg38 chr20 20011993 20016575 4.6 66.8 4.9 19.3 37.5 33 25.7
Marmoset hg38 chr11 134267373 134272307 4.9 48 10.3 5.8 26.6 52 243
Marmoset hg38 chr11 93232994 93232995 0 . . . . . 148
Marmoset hg38 chr16 11452411 11525004 72.6 57.6 3.66 14.7 29.3 42.3 21
Marmoset^ hg38 chr17_chr13 83228403 19349530 . . . . . . 358.5
Chimpanzee rheMac8 chr20 15098676 15131780 32.5 65.8 10.4 3.41 50 0.5 69.8
Squirrel monkey hg38 chr2 100587592 100601735 14.1 69.9 2.6 4.8 35.3 30.1 52.5
Chimpanzee* hg38 chr17 44694772 44700734 5.9 92.7 0 8.3 70.6 7.3 80
Orangutan* hg38 chr13 24407831 24480143 80.1 55.6 5 23.1 22 44.4 140
Orangutan* hg38 chr13 25361286 25366987 5.7 74.1 2.2 55.5 15.2 25.9 90
Gorilla* hg38 chr16 27185611 27191436 5.8 83.7 30 26.3 22.8 16.3 100
Gorilla* hg38 chr16 23303992 23307429 3.4 91.2 0 23.6 71.3 4.2 50
Chimpanzee* hg38 chr16 2782469 2798105 16.1 61.8 17.3 13.4 23.7 38.2 30
  1. Sequence composition of pre-integration site based on analysis of the orthologous location in the human genome (GRCh38)
  2. *Reported previously [14]
  3. ^Cytogenetic rearrangement between chromosomes