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Table 2 LCR16a-associated gene-containing segmental duplications

From: An evolutionary driver of interspersed segmental duplications in primates

Lineage identified HSA Location Size (kbp) Duplicon Genes* RefSeq gene
Primates chr16:14711689-14726338 9 LCR16a NPIP Nuclear pore complex interacting protein
Marmoset/Orangutan chr16:11527314-11548048 20.7 LCR16a-001 LITAF Lipopolysaccharide induced TNF factor
Marmoset/Orangutan   24.0 LCR16a-001a RMI2 RecQ mediated genome instability 2
Marmoset/Orangutan chr16:11320235-11452411 132.8 LCR16a-002 CTD-3088G3 Pseudogene--predicted transcript
Primates chr4:155451842-155466390 14.5 LCR16a-003 MTRNR2L Pseudogene-predicted transcript
Primates chr9:33565330-33577380 12 LCR16a-004 ANKRD18B Ankyrin repeat domain 18B
    REXO1 RNA exonuclease 1 homolog
Marmoset chr11:134239610-134264044 24.5 LCR16a-005 VPS26B Retromer complex component B
    THYN1 Thymocyte nuclear protein 1
    ACAD8 Acyl-CoA dehydrogenase family member 8
Marmoset chr11:93073398-93231243 157.8 LCR16a-007 SLC36A4 Solute carrier family 36 member 4
Primates chr16:14965442-15044835 79.3 LCR16a-009 PDXDC1 Pyridoxal dependent decarboxylase domain containing 1
Primates chr16:15387600-15416537 28.9 LCR16a-010 MPV17L Mitochondrial inner membrane protein like
Marmoset/Gorilla chr16:14681632-14616125 65.5 LCR16a-011 PARN Poly(A)-specific ribonuclease
    PLA2G10 Phospholipase A2
    BFAR Bifunctional apoptosis regulator
Primates chr1:148979684-149033477 36.9 LCR16a-012 PDE4DIP Phosphodiesterase 4D interacting protein
Marmoset chr20:19864676-20010962 146.3 LCR16a-015 RIN2 Regulation of Rab5-mediated early endocytosis
Marmoset chr20:20016850-20035552 18.7 LCR16a-016 NAA20 N (alpha)-acetyltransferase 20
    CRNKL1 Crooked neck pre-mRNA splicing factor 1
Marmoset chr16:10666581-10697471 30.9 LCR16a-017 TEKT5 Tektin 5
Marmoset chr3:150318404-150342624 24.2 LCR16a-018 LINC01214 Long intergenic non-protein-coding RNA 1214
Marmoset chr2:132835355-132908086 72.7 LCR16a-019 NCKAP5 NCK associated protein 5
Marmoset chr11:924494-962797 38.3 LCR16a-26 AP2A2 Adaptor related protein complex 2 subunit alpha 2
Marmoset chr8:50623663-50639745 16.1 LCR16a-27 SNTG1 Syntrophin gamma 1
Primates chr16:15062396-15097775 35.4 LCR16a-20 RRN3 RNA polymerase I transcription factor
African Ape/Prosimian chr16:20411068-20501378 90.3 LCR16a-25 ACSM2A, ACSM5 Acyl-CoA synthetase medium-chain family member
  1. *Most duplicate genes are incomplete, and annotation is based on RefSeq annotation of human reference genome (GRCh38)