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Table 2 Comparisons for clustering results based on peak counts relative to gene counts. Columns from left to right show the dataset tested, the resolution parameter (res) for the Seurat FindClusters program, the number of clusters returned from gene-level clustering, the number of clusters from peak-level clustering, the Fowlkes and Mallows (FM) index, and the Adjusted Rand Index (ARI)

From: Sierra: discovery of differential transcript usage from polyA-captured single-cell RNA-seq data

Dataset Resolution Clusters (gene) Clusters (peaks) FM index ARI
TIP 0.6 25 21 0.92 0.91
TIP 0.8 29 25 0.86 0.85
TIP 1.0 30 27 0.79 0.76
PBMC 7k 0.6 17 16 0.84 0.82
PBMC 7k 0.8 18 18 0.82 0.80
PBMC 7k 1.0 20 20 0.81 0.79
GFP + 0.6 10 12 0.75 0.70
GFP + 0.8 12 14 0.75 0.71
GFP + 1.0 14 16 0.66 0.62