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Table 1 Differential transcript usage (DTU) examples on the PBMC 7k dataset. Shown are the specific cluster comparisons performed, the number of peaks called as differentially used (DU), the percentage identified as proximal to the canonical polyadenylation motif, the percentage proximal to an A-rich region, the number of unique called DTU genes, the number of genes called as differentially expressed (DEG), and the number of overlapping genes from the DTU and DEG lists

From: Sierra: discovery of differential transcript usage from polyA-captured single-cell RNA-seq data

Comparison

Peaks

% Motif

% A-rich

DTU

DEG

Overlap

Mo1 vs CD4 + TC1

825

32

17

492

2042

251

Mo1 vs BC1

576

33

17

347

2059

189

CD8 + TC1 vs FCGR3A + Mo

339

35

17

214

1817

87

Mo2 vs NKC2

201

32

19

130

1471

57

NKC1 vs CD4 +TC1

83

29

33

63

1506

35

CD4 + TC1 vs CD8 + TC3

66

26

24

50

786

22

NKC1 vs BC1

39

18

36

26

1339

17

BC1 vs CD8 + TC1

28

36

21

21

957

9

CD4 + TC1 vs CD4 + TC2

33

27

27

28

386

10