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Table 1 Genome-wide proportions of C types per source and context

From: Cell type-specific genome scans of DNA methylation divergence indicate an important role for transposable elements

  

Proportion (%)

 

Context

CG

CHG

CHH

Source

C type

   

Aerial part

HMC

26.25

2.87

0.25

 

LMC

65.41

81.99

92.41

 

MMC

7.78

14.59

6.45

 

MSC

0.54

0.53

0.87

Embryo

HMC

23.48

4.61

0.54

 

LMC

72.07

86.67

93.31

 

MMC

4.15

8.20

5.75

 

MSC

0.28

0.49

0.38

Endosperm

HMC

11.69

2.56

0.11

 

LMC

73.21

87.94

95.90

 

MMC

14.00

8.80

3.65

 

MSC

1.08

0.67

0.32

Flower buds

HMC

30.24

7.00

0.32

 

LMC

63.68

82.12

94.27

 

MMC

5.67

10.31

5.04

 

MSC

0.40

0.55

0.35

Inflorescence

HMC

25.42

3.49

0.02

 

LMC

69.91

85.30

97.43

 

MMC

4.65

11.18

2.52

 

MSC

0.00

0.01

0.00

Root

HMC

21.53

1.00

0.01

 

LMC

69.12

84.85

96.73

 

MMC

9.10

14.12

3.24

 

MSC

0.23

0.01

0.00

Rosette

HMC

23.84

1.22

0.02

 

LMC

67.75

84.83

96.01

 

MMC

8.21

13.91

3.95

 

MSC

0.18

0.02

0.00

Shoot

HMC

21.08

1.63

0.13

 

LMC

68.29

83.56

94.82

 

MMC

10.56

14.76

4.97

 

MSC

0.05

0.03

0.06

Sperm cell

HMC

29.99

2.13

0.00

 

LMC

67.87

82.21

99.35

 

MMC

2.12

15.62

0.64

 

MSC

0.00

0.02

0.00

Vegetative nucleus

HMC

23.18

7.23

0.32

 

LMC

70.60

83.44

94.88

 

MMC

6.17

9.28

4.77

 

MSC

0.03

0.02

0.02

Whole organism

HMC

23.51

1.44

0.01

 

LMC

68.22

83.67

95.32

 

MMC

8.21

14.86

4.64

 

MSC

0.04

0.01

0.01