Table 5 Ninety-four genes that are completely or mostly missing in Ash1. The Mapping status column shows “unmapped” if the gene is entirely missing from Ash1, and “partial” if less than 50% of the gene appears in Ash1. Forty of the genes are protein-coding and 54 are noncoding. All of the protein-coding genes are members of multi-gene families. Abbreviations: NC, noncoding
From: Assembly and annotation of an Ashkenazi human reference genome
CHESS ID | Gene name | Gene type | GRCh38 location | Mapping status |
|---|---|---|---|---|
CHS.5 | LOC105379212 | NC | chr1:51943-53959 | Unmapped |
CHS.6 | OR4F5 | Protein | chr1:69091-70008 | Unmapped |
CHS.8 | LOC729737 | NC | chr1:134773-140566 | Unmapped |
CHS.461 | PRAMEF9 | Protein | chr1:13175281-13179132 | Unmapped |
CHS.2763 | LOC107985199 | Protein | chr1:143318207-143319096 | Unmapped |
CHS.2764 | LOC105371172 | NC | chr1:143323047-143327009 | Unmapped |
CHS.3550 | FCGR3B | Protein | chr1:161623196-161631963 | Unmapped |
CHS.4311 | LOC103021295 | NC | chr1:205957925-205958388 | Unmapped |
CHS.30466 | LIMS3-LOC440895 | NC | chr2:109898432-109968577 | Unmapped |
CHS.32660 | LOC728323 | NC | chr2:242088633-242169503 | Unmapped |
CHS.39504 | GTF2IP18 | NC | chr3:198185965-198189923 | Unmapped |
CHS.39507 | Unnamed | NC | chr3:198219778-198222386 | Unmapped |
CHS.45102 | LOC107986552 | NC | chr6:109026-111100 | Unmapped |
CHS.52504 | OR4F21 | Protein | chr8:166086-167024 | Unmapped |
CHS.52763 | LOC100133267 | Protein | chr8:12064389-12071747 | Unmapped |
CHS.54931 | DDX11L5 | NC | chr9:11987-14525 | Unmapped |
CHS.54937 | LINC01388 | NC | chr9:100804-114246 | Unmapped |
CHS.54939 | FOXD4 | Protein | chr9:116231-118417 | Unmapped |
CHS.56331 | LOC107987034 | Protein | chr9:104234781-104235568 | Unmapped |
CHS.56391 | Unnamed | Protein | chr9:107257286-107261972 | Unmapped |
CHS.7894 | OR51A2 | Protein | chr11:4954772-4955713 | Unmapped |
CHS.11017 | PRB2 | Protein | chr12:11391540-11395564 | Unmapped |
CHS.14171 | PRR20A | Protein | chr13:57140918-57143939 | Unmapped |
CHS.14613 | METTL21C | Protein | chr13:102685747-102704311 | Unmapped |
CHS.14764 | LOC102724510 | NC | chr13:111754561-111757459 | Unmapped |
CHS.18131 | GOLGA6L5P | NC | chr15:84506168-84516847 | Unmapped |
CHS.18488 | OR4F4 | Protein | chr15:101922142-101923059 | Unmapped |
CHS.19166 | NPIPA3 | Protein | chr16:14704711-14726338 | Unmapped |
CHS.20776 | LOC107987239 | NC | chr16:90220197-90225200 | Unmapped |
CHS.19681 | TP53TG3B | Protein | chr16:33358385-33363478 | Unmapped |
CHS.20874 | LOC105377826 | NC | chr17:61388-97400 | Unmapped |
CHS.20875 | LOC101929823 | NC | chr17:97711-133841 | Unmapped |
CHS.20876 | LOC101929828 | NC | chr17:110296-111566 | Unmapped |
CHS.22187 | KRTAP9-6 | Protein | chr17:41265378-41265860 | Unmapped |
CHS.23950 | LOC102724130 | NC | chr18:11103-15928 | Unmapped |
CHS.23951 | Unnamed | NC | chr18:14195-14958 | Unmapped |
CHS.23952 | LOC105371950 | NC | chr18:42666-4701 | Unmapped |
CHS.34254 | LOC102724184 | NC | chr21:5011163-5017158 | Unmapped |
CHS.34255 | LOC105379484 | NC | chr21:5011976-5012684 | Unmapped |
CHS.34256 | LOC102723996 | Protein | chr21:5022044-5046678 | Unmapped |
CHS.34276 | LOC102724370 | NC | chr21:6070758-6073132 | Unmapped |
CHS.34887 | LOC107987302 | NC | chr21:43434853-43442401 | Unmapped |
CHS.34888 | LINC00319 | NC | chr21:43450024-43453893 | Unmapped |
CHS.34889 | LINC00313 | NC | chr21:43462094-43478223 | Unmapped |
CHS.34912 | PWP2 | Protein | chr21:44107262-44131181 | Unmapped |
CHS.34913 | C21orf33 | Protein | chr21:44133612-44145723 | Unmapped |
CHS.34914 | LOC105377138 | Protein | chr21:44158746-44160189 | Unmapped |
CHS.35279 | LOC105377190 | NC | chr22:21359596-21360702 | Unmapped |
CHS.58009 | GAGE12J | Protein | chrX:49322030-49329387 | Unmapped |
CHS.58010 | GAGE13 | Protein | chrX:49331603-49338952 | Unmapped |
CHS.58011 | GAGE12B | Protein | chrX:49341183-49529921 | Unmapped |
CHS.58270 | FAM226B | NC | chrX:72777073-72779095 | Unmapped |
CHS.58374 | LOC102724150 | NC | chrX:89403129-89455254 | Unmapped |
CHS.58376 | TGIF2LX | Protein | chrX:89921941-89922883 | Unmapped |
CHS.58675 | RHOXF2B | Protein | chrX:120072264-120077742 | Unmapped |
CHS.58694 | CT47A12 | Protein | chrX:120877490-120932399 | Unmapped |
CHS.58695 | CT47A11 | Protein | chrX:120933840-120937260 | Unmapped |
CHS.58696 | CT47A10 | Protein | chrX:120938701-120942121 | Unmapped |
CHS.58697 | CT47A9 | Protein | chrX:120943561-120946981 | Unmapped |
CHS.58854 | CT45A2 | Protein | chrX:135811668-135820062 | Unmapped |
CHS.58856 | CT45A8 | Protein | chrX:135846497-135854588 | Unmapped |
CHS.58857 | CT45A9 | Protein | chrX:135863418-135871812 | Unmapped |
CHS.1790 | LOC107984964 | NC | chr1:61637114-61650098 | Partial |
CHS.2787 | LOC105371206 | NC | chr1:144153168-144170705 | Partial |
CHS.3547 | HSPA7 | NC | chr1:161601221-161608551 | Partial |
CHS.3548 | FCGR2C | NC | chr1:161562688-161604463 | Partial |
CHS.4366 | LOC105372881 | NC | chr1:207365822-207373252 | Partial |
CHS.5223 | Unnamed | NC | chr1:248535005-248536680 | Partial |
CHS.30144 | LOC105374854 | NC | chr2:88825277-88886154 | Partial |
CHS.31297 | PHOSPHO2-KLHL23 | Protein | chr2:169694454-169751886 | Partial |
CHS.39506 | Unnamed | NC | chr3:198198959-198219542 | Partial |
CHS.50848 | NSUN5P2 | NC | chr7:72948293-72954763 | Partial |
CHS.50952 | LOC541473 | NC | chr7:75391949-75395461 | Partial |
CHS.54613 | LOC107986982 | Protein | chr8:140620807-140625255 | Partial |
CHS.54936 | PGM5P3-AS1 | NC | chr9:72674-88826 | Partial |
CHS.55501 | ZNF658B | NC | chr9:39443815-39464526 | Partial |
CHS.55736 | LOC105376078 | NC | chr9:70669974-70714251 | Partial |
CHS.56296 | LOC105376181 | NC | chr9:100901764-100906823 | Partial |
CHS.6710 | LOC105378410 | NC | chr10:87189779-87194905 | Partial |
CHS.8878 | PGA3 | Protein | chr11:61203307-61216278 | Partial |
CHS.14172 | PRR20B | Protein | chr13:57147488-57150509 | Partial |
CHS.17645 | LOC105376718 | NC | chr15:66858141-66867024 | Partial |
CHS.18489 | LOC107987229 | NC | chr15:101936986-101939014 | Partial |
CHS.18491 | FAM138E | NC | chr15:101954885-101956355 | Partial |
CHS.20774 | LOC105371423 | NC | chr16:90186142-90219472 | Partial |
CHS.34257 | LOC105372832 | NC | chr21:5055735-5062892 | Partial |
CHS.34279 | LOC102724428 | Protein | chr21:6111134-6123778 | Partial |
CHS.34916 | LOC105377139 | NC | chr21:44172147-44191773 | Partial |
CHS.34917 | Unnamed | NC | chr21:44175401-44179738 | Partial |
CHS.57466 | Unnamed | NC | chrX:3891438-3902000 | Partial |
CHS.58012 | GAGE12C | Protein | chrX:49532177-49539541 | Partial |
CHS.58377 | LOC105373292 | NC | chrX:90234591-90265462 | Partial |
CHS.59131 | WASIR1 | NC | chrX:156014615-156017057 | Partial |
CHS.59270 | VCY1B | Protein | chrY:14056222-14056958 | Partial |