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Table 5 Ninety-four genes that are completely or mostly missing in Ash1. The Mapping status column shows “unmapped” if the gene is entirely missing from Ash1, and “partial” if less than 50% of the gene appears in Ash1. Forty of the genes are protein-coding and 54 are noncoding. All of the protein-coding genes are members of multi-gene families. Abbreviations: NC, noncoding

From: Assembly and annotation of an Ashkenazi human reference genome

CHESS IDGene nameGene typeGRCh38 locationMapping status
CHS.5LOC105379212NCchr1:51943-53959Unmapped
CHS.6OR4F5Proteinchr1:69091-70008Unmapped
CHS.8LOC729737NCchr1:134773-140566Unmapped
CHS.461PRAMEF9Proteinchr1:13175281-13179132Unmapped
CHS.2763LOC107985199Proteinchr1:143318207-143319096Unmapped
CHS.2764LOC105371172NCchr1:143323047-143327009Unmapped
CHS.3550FCGR3BProteinchr1:161623196-161631963Unmapped
CHS.4311LOC103021295NCchr1:205957925-205958388Unmapped
CHS.30466LIMS3-LOC440895NCchr2:109898432-109968577Unmapped
CHS.32660LOC728323NCchr2:242088633-242169503Unmapped
CHS.39504GTF2IP18NCchr3:198185965-198189923Unmapped
CHS.39507UnnamedNCchr3:198219778-198222386Unmapped
CHS.45102LOC107986552NCchr6:109026-111100Unmapped
CHS.52504OR4F21Proteinchr8:166086-167024Unmapped
CHS.52763LOC100133267Proteinchr8:12064389-12071747Unmapped
CHS.54931DDX11L5NCchr9:11987-14525Unmapped
CHS.54937LINC01388NCchr9:100804-114246Unmapped
CHS.54939FOXD4Proteinchr9:116231-118417Unmapped
CHS.56331LOC107987034Proteinchr9:104234781-104235568Unmapped
CHS.56391UnnamedProteinchr9:107257286-107261972Unmapped
CHS.7894OR51A2Proteinchr11:4954772-4955713Unmapped
CHS.11017PRB2Proteinchr12:11391540-11395564Unmapped
CHS.14171PRR20AProteinchr13:57140918-57143939Unmapped
CHS.14613METTL21CProteinchr13:102685747-102704311Unmapped
CHS.14764LOC102724510NCchr13:111754561-111757459Unmapped
CHS.18131GOLGA6L5PNCchr15:84506168-84516847Unmapped
CHS.18488OR4F4Proteinchr15:101922142-101923059Unmapped
CHS.19166NPIPA3Proteinchr16:14704711-14726338Unmapped
CHS.20776LOC107987239NCchr16:90220197-90225200Unmapped
CHS.19681TP53TG3BProteinchr16:33358385-33363478Unmapped
CHS.20874LOC105377826NCchr17:61388-97400Unmapped
CHS.20875LOC101929823NCchr17:97711-133841Unmapped
CHS.20876LOC101929828NCchr17:110296-111566Unmapped
CHS.22187KRTAP9-6Proteinchr17:41265378-41265860Unmapped
CHS.23950LOC102724130NCchr18:11103-15928Unmapped
CHS.23951UnnamedNCchr18:14195-14958Unmapped
CHS.23952LOC105371950NCchr18:42666-4701Unmapped
CHS.34254LOC102724184NCchr21:5011163-5017158Unmapped
CHS.34255LOC105379484NCchr21:5011976-5012684Unmapped
CHS.34256LOC102723996Proteinchr21:5022044-5046678Unmapped
CHS.34276LOC102724370NCchr21:6070758-6073132Unmapped
CHS.34887LOC107987302NCchr21:43434853-43442401Unmapped
CHS.34888LINC00319NCchr21:43450024-43453893Unmapped
CHS.34889LINC00313NCchr21:43462094-43478223Unmapped
CHS.34912PWP2Proteinchr21:44107262-44131181Unmapped
CHS.34913C21orf33Proteinchr21:44133612-44145723Unmapped
CHS.34914LOC105377138Proteinchr21:44158746-44160189Unmapped
CHS.35279LOC105377190NCchr22:21359596-21360702Unmapped
CHS.58009GAGE12JProteinchrX:49322030-49329387Unmapped
CHS.58010GAGE13ProteinchrX:49331603-49338952Unmapped
CHS.58011GAGE12BProteinchrX:49341183-49529921Unmapped
CHS.58270FAM226BNCchrX:72777073-72779095Unmapped
CHS.58374LOC102724150NCchrX:89403129-89455254Unmapped
CHS.58376TGIF2LXProteinchrX:89921941-89922883Unmapped
CHS.58675RHOXF2BProteinchrX:120072264-120077742Unmapped
CHS.58694CT47A12ProteinchrX:120877490-120932399Unmapped
CHS.58695CT47A11ProteinchrX:120933840-120937260Unmapped
CHS.58696CT47A10ProteinchrX:120938701-120942121Unmapped
CHS.58697CT47A9ProteinchrX:120943561-120946981Unmapped
CHS.58854CT45A2ProteinchrX:135811668-135820062Unmapped
CHS.58856CT45A8ProteinchrX:135846497-135854588Unmapped
CHS.58857CT45A9ProteinchrX:135863418-135871812Unmapped
CHS.1790LOC107984964NCchr1:61637114-61650098Partial
CHS.2787LOC105371206NCchr1:144153168-144170705Partial
CHS.3547HSPA7NCchr1:161601221-161608551Partial
CHS.3548FCGR2CNCchr1:161562688-161604463Partial
CHS.4366LOC105372881NCchr1:207365822-207373252Partial
CHS.5223UnnamedNCchr1:248535005-248536680Partial
CHS.30144LOC105374854NCchr2:88825277-88886154Partial
CHS.31297PHOSPHO2-KLHL23Proteinchr2:169694454-169751886Partial
CHS.39506UnnamedNCchr3:198198959-198219542Partial
CHS.50848NSUN5P2NCchr7:72948293-72954763Partial
CHS.50952LOC541473NCchr7:75391949-75395461Partial
CHS.54613LOC107986982Proteinchr8:140620807-140625255Partial
CHS.54936PGM5P3-AS1NCchr9:72674-88826Partial
CHS.55501ZNF658BNCchr9:39443815-39464526Partial
CHS.55736LOC105376078NCchr9:70669974-70714251Partial
CHS.56296LOC105376181NCchr9:100901764-100906823Partial
CHS.6710LOC105378410NCchr10:87189779-87194905Partial
CHS.8878PGA3Proteinchr11:61203307-61216278Partial
CHS.14172PRR20BProteinchr13:57147488-57150509Partial
CHS.17645LOC105376718NCchr15:66858141-66867024Partial
CHS.18489LOC107987229NCchr15:101936986-101939014Partial
CHS.18491FAM138ENCchr15:101954885-101956355Partial
CHS.20774LOC105371423NCchr16:90186142-90219472Partial
CHS.34257LOC105372832NCchr21:5055735-5062892Partial
CHS.34279LOC102724428Proteinchr21:6111134-6123778Partial
CHS.34916LOC105377139NCchr21:44172147-44191773Partial
CHS.34917UnnamedNCchr21:44175401-44179738Partial
CHS.57466UnnamedNCchrX:3891438-3902000Partial
CHS.58012GAGE12CProteinchrX:49532177-49539541Partial
CHS.58377LOC105373292NCchrX:90234591-90265462Partial
CHS.59131WASIR1NCchrX:156014615-156017057Partial
CHS.59270VCY1BProteinchrY:14056222-14056958Partial