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Table 2 Comparison of Nx, NGx (i.e., Nx with respect to the original human reference genome assembly; in bp), and other QUAST statistics for the different assemblies (artificial assembly, corrected instaGRAAL, and SALSA2) of the Homo sapiens genome

From: instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

  Reference genome assembly Artificial assembly instaGRAAL SALSA2
N50 145,138,636 300,000 143,373,745 152,389,473
NG50 145,138,636 300,000 143,373,745 152,389,473
N75 107,043,718 300,000 89,477,166 130,103,422
NG75 107,043,718 300,000 82,128,910 103,672,000
L50 9 5165 9 9
LG50 9 5454 9 9
L75 15 7747 15 15
LG75 15 8181 17 17
No. of genomic features 3,625,295
+ 305 part
3,411,473
+ 44,299 part
3,456,227
+ 3836 part
3,415,115
+ 44,127 part
Genome fraction (%) 100.0 94.6 94.6 94.5
No. of misassemblies 9 0 776 438