Table 2 Comparison of Nx, NGx (i.e., Nx with respect to the original human reference genome assembly; in bp), and other QUAST statistics for the different assemblies (artificial assembly, corrected instaGRAAL, and SALSA2) of the Homo sapiens genome
Reference genome assembly | Artificial assembly | instaGRAAL | SALSA2 | |
|---|---|---|---|---|
N50 | 145,138,636 | 300,000 | 143,373,745 | 152,389,473 |
NG50 | 145,138,636 | 300,000 | 143,373,745 | 152,389,473 |
N75 | 107,043,718 | 300,000 | 89,477,166 | 130,103,422 |
NG75 | 107,043,718 | 300,000 | 82,128,910 | 103,672,000 |
L50 | 9 | 5165 | 9 | 9 |
LG50 | 9 | 5454 | 9 | 9 |
L75 | 15 | 7747 | 15 | 15 |
LG75 | 15 | 8181 | 17 | 17 |
No. of genomic features | 3,625,295 + 305 part | 3,411,473 + 44,299 part | 3,456,227 + 3836 part | 3,415,115 + 44,127 part |
Genome fraction (%) | 100.0 | 94.6 | 94.6 | 94.5 |
No. of misassemblies | 9 | 0 | 776 | 438 |