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Table 1 List of software used in this paper

From: Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank

Resource

Version

Conterminator

fa1c80

MMseqs2 [23]

333546

KrakenUniq [32]

5c0019

Pavian [33]

81d784

RefSeq [17]

July 2019

GenBank [1]

Dec 2018

Jalview [34]

2.11.0

  1. The versions for MMseqs2, KrakenUniq, and Pavian are the first 6 characters of the git commit. For databases, we list the date at which the data was downloaded