Skip to main content

Table 1 CPU time (in minutes) required to analyze a simulated fungal metatranscriptome (mtt, ~ 9M PE reads) and a fungal metagenome (mtg, ~ 6.7M PE reads)

From: CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data

 ntRefSeq-bfRefSeq-f-Partial
mttmtgmttmtgmttmtg
Kraken210.927.055.293.984.483.50
CCMetagen*17.2413.5485.7467.0069.2920.58
Centrifuge40.1127.5423.7019.4116.6716.10
KrakenUniq74.1174.9443.3340.8529.6521.04
  1. *The CCMetagen time was calculated as the sum of the CPU time used by KMA and CCMetagen