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Table 1 Summary of comparison between REPIC and published databases

From: REPIC: a database for exploring the N6-methyladenosine methylome

Item

REPIC

RMBase v2.0*

MeT-DB v2.0

CVm6A

Species

11

13

7

2

Cell/tissue

61

45

40

31

Data set

49

39

26

23

Sample

672

524

437

130

Peak set

339

NA

185

69

De novo data processing

**

Pipeline supported

NA

NA

NA

Peak calling tools

exomePeak MeTPeak MACS2

exomePeak**

exomePeak

MeTPeak

Cell/tissue-based query

NA

NA

Genome browser

Intergenic m6A query

NA

NA

NA

RNA modification type

m6A

5+***

m6A

m6A

Epigenomic data

1536

NA

NA

NA

  1. NA not available
  2. *Statistics from five modification types (m1A, m5C, m6A, Nm, and Ψ)
  3. **Only m6A/MeRIP-seq and m1A-seq data were considered
  4. ***More than five RNA modification types