Table 1 Summary of comparison between REPIC and published databases
From: REPIC: a database for exploring the N6-methyladenosine methylome
Item | REPIC | RMBase v2.0* | MeT-DB v2.0 | CVm6A |
|---|---|---|---|---|
Species | 11 | 13 | 7 | 2 |
Cell/tissue | 61 | 45 | 40 | 31 |
Data set | 49 | 39 | 26 | 23 |
Sample | 672 | 524 | 437 | 130 |
Peak set | 339 | NA | 185 | 69 |
De novo data processing | ✓ | ✓** | ✓ | ✓ |
Pipeline supported | ✓ | NA | NA | NA |
Peak calling tools | exomePeak MeTPeak MACS2 | exomePeak** | exomePeak | MeTPeak |
Cell/tissue-based query | ✓ | NA | NA | ✓ |
Genome browser | ✓ | ✓ | ✓ | ✓ |
Intergenic m6A query | ✓ | NA | NA | NA |
RNA modification type | m6A | 5+*** | m6A | m6A |
Epigenomic data | 1536 | NA | NA | NA |