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Fig. 3 | Genome Biology

Fig. 3

From: Diverse genetic mechanisms underlie worldwide convergent rice feralization

Fig. 3

Rice cultivar founders for multiple Asian weedy rice populations. Based on kinship analysis, six rice cultivars are inferred to have given rise to multiple weedy rice strains in the regions where the cultivars are/were grown. Circle sizes indicate sample sizes (from 1 to 25 accessions per circle). b The pedigree of Nanjing11. The accessions which are genome re-sequenced in this study are colored in blue, and the pre-Green Revolution cultivars (non-dwarf) are indicated by an asterisk “*”. NTH: Nantehao; SLX: Shenglixian; GC13: Guangchang13; Aizi4: Aizhaizhan4; GCA5; Guangchangai5; ST2930: Situo2930; ZN4: Zhongnong4; NJ1: Nanjing1; EJA4: Erjiuai4. c Phylogenetic tree for the Nanjing11 pedigree accessions and weedy rice which have the highest kinship with Nanjing11. The branch of weedy rice including 22, 4, and 1 sample from Jiangsu (JS), Zhejiang (ZJ) and Guangdong (GD), China, is indicated in red. In addition to six Nanjing11 pedigree accessions, a total of 50 other indica cultivars which are the closest to the weedy rice group were also included in the tree. Three japonica accessions, in gray, are used as an outgroup

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