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Table 1 Comparison of methods on ENCODE-DREAM challenge test set

From: Completing the ENCODE3 compendium yields accurate imputations across a variety of assays and human biosamples

BiosampleiPSCPC-3LiverLiverLiverLiverLiverLiverLiver
AssayCTCFCTCFEGR1FOXA1GABPAJUNDMAXRESTTAF1
Method         
Yuanfang Guan0.7290.6000.3970.2820.3530.5330.4410.3190.281
dxquang0.8660.7830.2740.4000.3470.2600.3300.3120.264
autosome.ru0.7780.4860.3310.2430.3420.4160.3840.2640.221
J-TEAM0.8120.7470.3630.4620.3440.4150.3770.1960.272
Avocado0.7230.7910.5300.3540.3960.6600.5740.4770.384
Similar biosample0.3630.3890.2260.5680.4460.408
Same biosample0.7410.8780.6480.7160.5730.7310.6220.6220.556
Average activity0.5740.7350.2400.2990.2530.2230.3490.1240.140
  1. The average precision (AP) computed across nine epigenomic experiments in the ENCODE-DREAM challenge test set in chromosome 21. For each track, the score for the best-performing predictive model is in boldface