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Table 1 Algorithms for analyzing CRISPR-pooled screen data

From: A benchmark of algorithms for the analysis of pooled CRISPR screens

Algorithm

Original purpose

FDRs?

Guide inefficiencies?

Negative controls?

Single or multiple screens?

RSA

RNAi

No

No

No

Single

MAGeCK RRA

CRISPRko

Yes

No

Yes

Single

HiTSelect

CRISPRko & RNAi

Yes

Yes

Yes

Single

MAGeCK MLE

CRISPRko

Yes

Yes

Yes

Both

BAGEL

CRISPRko essentiality

Yes

No

Yes

Single

CERES

CRISPRko in cancer

Yes

Yes

No

Multiple

CRISPhieRmix

CRISPRi/a

Yes

Yes

Yes

Single