From: A benchmark of algorithms for the analysis of pooled CRISPR screens
Algorithm | Original purpose | FDRs? | Guide inefficiencies? | Negative controls? | Single or multiple screens? |
---|---|---|---|---|---|
RSA | RNAi | No | No | No | Single |
MAGeCK RRA | CRISPRko | Yes | No | Yes | Single |
HiTSelect | CRISPRko & RNAi | Yes | Yes | Yes | Single |
MAGeCK MLE | CRISPRko | Yes | Yes | Yes | Both |
BAGEL | CRISPRko essentiality | Yes | No | Yes | Single |
CERES | CRISPRko in cancer | Yes | Yes | No | Multiple |
CRISPhieRmix | CRISPRi/a | Yes | Yes | Yes | Single |