Table 1 Structural differences identified by SyRI and corresponding computational resources
From: SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies
Species | Sample | Assembly size | CPU runtime (in seconds) | Memory usage (in MB) | Â | Syntenic regions | Structural rearrangements | Un-aligned | ||
|---|---|---|---|---|---|---|---|---|---|---|
Inversion | Translocation | Duplication | ||||||||
Human | NA12878 | 3.03 Gb | 542.71 | 581 | Size | 2.8 Gb | 7.0 Mb | 11.6 Mb | 27.9 Mb | 224.1 Mb |
% genome | 91.1 | 0.2 | 0.4 | 0.9 | 7.4 | |||||
Number | 1147 | 66 | 270 | 3766 | 840 | |||||
NA19240 | 3.04 Gb | 528.79 | 1003 | Size | 2.8 Gb | 3.7 Mb | 11.8 Mb | 27.1 Mb | 208.8 Mb | |
% genome | 91.7 | 0.1 | 0.4 | 0.9 | 6.9 | |||||
Number | 1134 | 68 | 254 | 3429 | 848 | |||||
Yeast | YJM1447 | 12.1 Mb | 34.51 | 5 | Size | 11.2 Mb | 1.8 kb | 92.0 kb | 629.6 kb | 87.3 kb |
% genome | 92.5 | 0.02 | 0.8 | 6.0 | 0.7 | |||||
Number | 222 | 3 | 54 | 370 | 164 | |||||
Fruit Fly | A4 | 135.5 Mb | 522.02 | 289 | Size | 124.8 Mb | 119.5 kb | 2.0 Mb | 7.5 Mb | 1.2 Mb |
% genome | 92.1 | 0.1 | 1.4 | 5.5 | 0.8 | |||||
Number | 1947 | 15 | 636 | 4387 | 1365 | |||||
Maize | PH207 | 2.06 Gb | 3342.62 | 5873 | Size | 1.3 Gb | 82.5 Mb | 10.1 Mb | 15.9 Mb | 669.6 Mb |
% genome | 62.2 | 4.0 | 0.5 | 0.8 | 32.5 | |||||
Number | 8779 | 195 | 3954 | 9612 | 15,166 | |||||